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RandomIdeals.m2
newPackage( "RandomIdeals", Version => "2.0", Date => "May 9, 2016", Authors => { {Name => "Katie Ansaldi", Email => "kansaldi@gmail.com"}, {Name => "David Eisenbud", Email => "de@msri.org", HomePage => "http://www.msri.org/~de"}, {Name => "Robert Krone", Email => "rckrone@gmail.com", HomePage => "http://rckr.one"}, {Name => "Jay Yang", Email => "jkelleyy@gmail.com"} }, HomePage => "http://www.msri.org/~de", Headline => "creating random ideals of various sorts", Keywords => {"Examples and Random Objects"}, AuxiliaryFiles => false, -- set to true if package comes with auxiliary files, PackageExports =>{"EdgeIdeals", "BinomialEdgeIdeals"}, DebuggingMode => false -- set to true only during development ) export { "randomIdeal", "randomMonomialIdeal", "randomSquareFreeMonomialIdeal", "randomSquareFreeStep", "randomBinomialIdeal", "randomPureBinomialIdeal", "randomSparseIdeal", "randomEdgeIdeal", "randomBinomialEdgeIdeal", "randomToricEdgeIdeal", "randomElementsFromIdeal", "randomMonomial", "squareFree", "regSeq", "AlexanderProbability", "randomAddition", "randomShelling", "idealFromShelling", "idealChainFromShelling", "isShelling", "randomShellableIdeal", "randomShellableIdealChain" } randomMonomial = method(TypicalValue => RingElement) randomMonomial(ZZ,Ring) := RingElement => (d,S) -> ( m := basis(d,S); m_(0,random rank source m)) randomMonomialIdeal=method(TypicalValue => Ideal) randomMonomialIdeal(Sequence, Ring) := Ideal => (L,S)-> randomMonomialIdeal(toList L, S) randomMonomialIdeal(List, Ring) := Ideal => (L,S)->( --produces an ideal minimally generated --by random monomials of degrees given in L, --unless the low degree terms generate all monomials --in one of the higher degrees requested, --in which case the ideal fulfills as many of --the conditions as possible (from lowest degree), --and produces a message. -- --first produce a list in ascending order of degree, --specifying how many elements are required from that degree Lu := sort unique L; Ls := apply(Lu, t -> #positions(L, s->(s==t))); --handle the initial degree M := flatten entries basis(Lu#0, S^1); if Ls#0 < #M then I := ideal((random M)_{0..Ls#0-1}) else ( I = ideal(M); <<"***** there are only " << binomial(Lu#0+numgens S-1,Lu#0) <<" monomials of degree " << Lu#0 <<endl; return I ); --now the rest of the degrees, if any. for t from 1 to #Lu-1 do ( M = flatten entries compress (basis(Lu#t,S^1) % I); if Ls#t < #M then I = I+ideal((random M)_{0..Ls#t-1}) else ( if #M=!=0 then I = I+ideal(M); print("low degree gens generated everything"); break) ); I ) randomSquareFreeMonomialIdeal=method(TypicalValue => Ideal) randomSquareFreeMonomialIdeal(Sequence, Ring) := Ideal => (L,S)-> randomSquareFreeMonomialIdeal(toList L, S) randomSquareFreeMonomialIdeal(List, Ring) := Ideal => (L,S)->( --L is a list of degrees desired, The routine --produces an ideal minimally generated by random --square-free monomials of exactly the numbers and degrees given in L, --unless the low degree terms generate --all monomials in one of the higher degrees requested, --in which case the ideal fulfills as --many of the conditions as possible (from lowest degree). -- --first produce a list in ascending order of degree, specifying how many elements are required from that degree Lu := sort unique L; Ls := apply(Lu, t -> #positions(L, s->(s==t))); M := flatten entries gens squareFree(Lu#0, S); if Ls#0 < #M then I := ideal((random M)_{0..Ls#0-1}) else (I = ideal(M); <<"***** there are only " <<binomial(numgens S,Lu#0)<< " square-free monomials of degree " << Lu#0 <<endl; return I ); for t from 1 to #Lu-1 do ( M=flatten entries compress (gens squareFree(Lu#t,S) % I); if Ls#t < #M then I = I+ideal((random M)_{0..Ls#t-1}) else (if #M=!=0 then I = I+ideal(M); print("low degree gens generated everything"); break ) ); I ) randomSquareFreeStep = method(Options=>{AlexanderProbability => .05}) soc = I -> ( --I should be a MonomialIdeal p:=product gens ring I; apply(flatten entries gens dual I, m->p//m)) prepare= I->( --I should be a MonomialIdeal Igens := flatten entries gens I; ISocgens := soc I; {I,Igens,ISocgens}) randomSquareFreeStep(Ideal) := o -> (I) ->( if isMonomialIdeal I then randomSquareFreeStep(monomialIdeal I, o) else error "ideal not generated by monomials") randomSquareFreeStep(MonomialIdeal) := o -> (I) ->( if isSquareFree I then randomSquareFreeStep (prepare I, o) else error "ideal not square-free") randomSquareFreeStep(List) := o -> (L) ->( I := L_0; S := ring I; mm := monomialIdeal vars S; mm2 := monomialIdeal apply (flatten entries vars S, p->p^2); --With probability given by the option AlexanderProbability (default .05), --the routine simply returns the Alexander dual of I. if random RR <o.AlexanderProbability then return prepare dual I; --form a candidate step Igens := L_1; nI := #Igens; ISocgens := L_2; nSocI := #ISocgens; if random RR < nSocI/(nI+nSocI) then J := I + monomialIdeal ISocgens_(random nSocI) else ( --p := random nI; p := monomialIdeal Igens_(random nI); -- p' := select(toList(0..nI-1), j->j!=p); p' := I-p; -- returns the ideal generated by all the gens but p sqFreeMults := (mm*p)-mm2; -- sqFreeMults := substitute(monomialIdeal(gens(mm*ideal(Igens_p))%mm2), S); -- J = trim (ideal(Igens_p')+sqFreeMults) J = p'+sqFreeMults ); --Decide whether to accept the step or not Jgens := flatten entries gens J; nJ := #Jgens; JSocgens := soc J; nSocJ := #JSocgens; --accept with probability P (if P<1) or unconditionally (P>=1): P := (nI+nSocI)/(nJ+nSocJ); if random RR < P then {J,Jgens,JSocgens} else {I,Igens,ISocgens} ) squareFree = method(TypicalValue => Ideal) squareFree(ZZ,Ring) := Ideal => (d,S) -> --returns the ideal generated by all square free monomials of degree d ideal compress(basis(d,S^1) % ideal apply (flatten entries vars S, p -> p^2)) randomPureBinomialIdeal = method(TypicalValue => Ideal) randomPureBinomialIdeal(Sequence, Ring) := Ideal => (L,S)->randomPureBinomialIdeal(toList L, S) randomPureBinomialIdeal(List, Ring) := Ideal => (L,S)->( --L=list of degrees of the generators trim ideal apply(L, d->randomMonomial(d,S)-randomMonomial(d,S)) ) randomBinomialIdeal = method(TypicalValue => Ideal) randomBinomialIdeal(Sequence, Ring) := Ideal => (L,S)->randomPureBinomialIdeal(toList L, S) randomBinomialIdeal(List, Ring) := Ideal => (L,S)->( --L=list of degrees of the generators kk:=ultimate (coefficientRing, S); trim ideal apply(L, d->randomMonomial(d,S)-random(kk)*randomMonomial(d,S)) ) /// /// randomSparseIdeal = method(TypicalValue => Ideal) randomSparseIdeal(Matrix, ZZ, ZZ) := Ideal => (B,s,n) -> ( -- B is a 1xt matrix of monomials -- s is the size of each poly -- n is the number of polys S := ring B; t := rank source B; BB := (first entries B); kk := ultimate(coefficientRing, S); trim ideal apply(n, j -> sum apply(s, i -> random kk * BB#(random t))) ) randomIdeal = method(TypicalValue => Ideal) randomIdeal(Sequence,Matrix) := Ideal => (L,B) -> randomIdeal(toList L, B) randomIdeal(List,Matrix) := Ideal => (L,B) -> ( -- B is a 1 x n matrix of homogeneous polynomials -- L is a list of degrees trim ideal(B * random(source B, (ring B)^(-L))) ) regSeq = method(TypicalValue => Ideal) regSeq (Sequence, Ring) := Ideal => (L,S)-> regSeq(toList L, S) regSeq (List, Ring) := Ideal => (L,S)->( --forms an ideal generated by powers of the variables. --L=list of NN. uses the initial subsequence of L as powers ideal for m to min(#L,rank source vars S)-1 list S_m^(L_m)) randomElementsFromIdeal = method(TypicalValue => Ideal) randomElementsFromIdeal(List, Ideal) := Ideal => (L,I)->( trim ideal((gens I)*random(source gens I, (ring I)^(-L)))) ----------From Shelling testNewSimplex = method() testNewSimplex(List, List) := (P, D) ->( --given a pure, d-dimensional simplicial complex (sc) as a list of ordered lists of d+1 vertices in [n], and --a simplex D as such a list, tests whether the intersection of D with P is a union of facets of D. d := #D-1; --dimension ints := apply(P, D' -> intersectLists(D',D)); facets := apply(unique select(ints, E -> #E==d),set); antiFacets := apply(facets,F -> (D-F)#0); if facets == {} then return false; smalls := unique select(ints, E -> #E<d); all(smalls, e -> any(antiFacets, v -> not member(v,e))) ) intersectLists = (D',D) -> D - set(D-set D') randomAddition = method() randomAddition(ZZ,ZZ,List) := (n,m,P) ->( if #P == 0 then return {randomSubset(n,m+1)}; Plarge := select(P, D-> #D >= m+1); -- the facets big enough to be glued to if #Plarge == 0 then error "m is too large"; t := false; D' := {null}; D := Plarge#(random(#Plarge)); -- a random facet from Plarge compD := toList(0..n-1) - set D; count := 0; while not t and count < 20 do ( i := random (#compD); J := randomSubset(#D,#D-m); D' = sort(D - set apply(J, j->D_j) | {compD_i}); t = (testNewSimplex(P,D')); count = count+1); if count == 20 then return P; unique (P|{D'}) ) listsToMonomials = (P,R) -> apply(P, D -> product apply(D,d->R_d)) squareFreeMonomialsToLists = (L,R)->( varToIndex := i->position(gens R, j->j==i); apply (L/support, j->j/varToIndex)) /// S = ZZ/101[a,b,c] L = flatten entries matrix"ab,a2,abc2" varToIndex b viewHelp position /// randomAddition(Ring,ZZ,List) := (R,m,L) -> ( P := squareFreeMonomialsToLists(L,R); listsToMonomials(randomAddition(numgens R,m,P),R) ) idealFromShelling = method() idealFromShelling (Ring,List) := (S,P) -> ( Delta := toList (0..numgens S - 1); V := vars S; monomialIdeal intersect apply(P, D -> monomialIdeal {V_(Delta - set D)}) ) idealFromShelling List := P -> ( n := (max flatten P)+1; x := symbol x; S := QQ[x_0..x_(n-1)]; idealFromShelling(S,P) ) /// R = ZZ/101[x_0..x_4]; I = randomShellableIdeal(R,2,6) S /// idealChainFromShelling = method() idealChainFromShelling(Ring,List) := (S,P) -> toList apply(#P,i->idealFromShelling(S,take(P,i+1))) idealChainFromShelling List := P -> toList apply(#P,i->idealFromShelling(take(P,i+1))) isShelling = method() isShelling(List) := P -> all(#P, i-> i==0 or testNewSimplex(take(P,i),P#i)) randomShelling = method() -- random chain of shellable complexes on n vertices, with pure dim m, up to the complete m skeleton randomShelling(ZZ,ZZ) := (n,m) -> randomShelling(n,m,binomial(n,m+1)) -- random chain of shellable complexes on n vertices, with pure dim m, and k facets --Should we change the following to start with {{0..m}, {0..m-1,m} to diminish autos? randomShelling(ZZ,ZZ,ZZ) := (n,m,k) -> ( if k > binomial(n,m+1) then error "k is too large"; P := {}; while #P < k do P = randomAddition(n,m,P); P ) randomShellableIdeal=method() randomShellableIdeal(Ring,ZZ,ZZ) := (R,dimProj,deg) -> ( idealFromShelling(R,randomShelling(numgens R ,dimProj, deg)) ) randomShellableIdealChain=method() randomShellableIdealChain(Ring,ZZ,ZZ) := (R,dimProj,deg)->( idealChainFromShelling(R,randomShelling(numgens R,dimProj,deg)) ) randomShellableIdealChain(Ring,ZZ) := (R,dimProj)->( idealChainFromShelling(R,randomShelling(numgens R,dimProj)) ) /// S = ZZ/101[x_0..x_5] I = randomShellableIdeal(S,2,5) dim I == 3 degree I == 5 S = ZZ/101[x_0..x_4] I = randomShellableIdeal(S,2,6) /// randomShelling(Ring,ZZ,ZZ) := (R,m,k) -> listsToMonomials(randomShelling(numgens R,m,k),R) randomShelling(Ring,ZZ) := (R,m) -> listsToMonomials(randomShelling(numgens R,m),R) randomEdgeIdeal = method() randomEdgeIdeal(ZZ,ZZ) := (n,t) -> ( needsPackage "EdgeIdeals"; needsPackage "BinomialEdgeIdeals"; x:=symbol x; G:=randomGraph(QQ[x_1..x_n],t); (G, edgeIdeal(G)) ) TEST/// randomEdgeIdeal(8, 5) randomBinomialEdgeIdeal(7, 4) randomToricEdgeIdeal(6,10) /// --Random binomial edge ideal --n is number of vertices, t is number of edges of the graph randomBinomialEdgeIdeal = method(); randomBinomialEdgeIdeal(ZZ,ZZ) := (n, t) -> ( needsPackage "EdgeIdeals"; needsPackage "BinomialEdgeIdeals"; x := symbol x; G := randomGraph(QQ[x_1..x_n], t); E := apply(edges G, i -> apply(i, j -> index j+1)); return (binomialEdgeIdeal(E), G) ) --Random toric edge ideal --n is number of variables, t is number of edges of the graph randomToricEdgeIdeal = method(); randomToricEdgeIdeal(ZZ,ZZ) := (n, t) -> ( needsPackage "BinomialEdgeIdeals"; needsPackage "EdgeIdeals"; e := local e; x := local x; R := QQ[x_1..x_n]; S := QQ[e_1..e_t]; G := randomGraph(R,t); E := apply(edges G, product); (ker map(R,S,E), G) ) ------------------------------------------------------------ -- DOCUMENTATION RandomIdeals -- documentation ------------------------------------------------------------ beginDocumentation() doc /// Key RandomIdeals Headline A package to construct various sorts of random ideals Description Text This package can be used to make experiments, trying many ideals, perhaps over small fields. For example...what would you expect the regularities of "typical" monomial ideals with 10 generators of degree 3 in 6 variables to be? Try a bunch of examples -- it's fast. Here we do only 500 -- this takes about a second on a fast machine -- but with a little patience, thousands can be done conveniently. Example setRandomSeed(currentTime()) kk=ZZ/101; S=kk[vars(0..5)]; time tally for n from 1 to 500 list regularity randomMonomialIdeal(10:3,S) Text How does this compare with the case of binomial ideals? or pure binomial ideals? We invite the reader to experiment, replacing "randomMonomialIdeal" above with "randomBinomialIdeal" or "randomPureBinomialIdeal", or taking larger numbers of examples. Click the link "Finding Extreme Examples" below to see some other, more elaborate ways to search. SeeAlso "Finding Extreme Examples" randomIdeal randomMonomialIdeal randomSquareFreeMonomialIdeal randomSquareFreeStep randomBinomialIdeal randomPureBinomialIdeal randomSparseIdeal randomElementsFromIdeal randomMonomial randomShellableIdeal randomShellableIdealChain randomShelling /// ------------------------------------------------------------ -- DOCUMENTATION randomShelling ------------------------------------------------------------ doc /// Key randomShelling (randomShelling,ZZ,ZZ) (randomShelling,ZZ,ZZ,ZZ) (randomShelling,Ring,ZZ) (randomShelling,Ring,ZZ,ZZ) Headline produces a random chain of shellable complexes Usage P=randomShelling(n,m) P=randomShelling(n,m,k) P=randomShelling(R,m) P=randomShelling(R,m,k) Inputs n:ZZ the number of vertices R:Ring a polynomial ring with a variable for each vertex m:ZZ the dimension of the facets k:ZZ the number of facets (if omitted, the number will be {\tt n} choose {\tt m+1}) Outputs P:List A list of lists of integers. Each list of integers is a facet of the complex and the order is a shelling. If called with a Ring {\tt R} instead of an integer {\tt n}, each facet is represented by a square-free monomial instead of a list. Description Text The function produces a list of facets of a random shellable simplicial complex. The order of the facets is a shelling. Text The algorithm works by choosing one of the previous facets at random, and replacing one of its vertices with a new vertex chosen at random. If the choice meets the criteria of a shelling, that facet is added to list, otherwise it is discarded and the algorithm tries again. The first facet is chosen uniformly at random. The call randomShelling(n,m) produces a *complete* chain -- that is, a shelling of the m-skeleton of the (n-1)-simplex, with the simplices listed in order, so that any initial subsequence of length d gives a (random) shellable simplicial complex with d facets. The probability distribution for this random selection is presumably not the uniform one; it would be nice to write a reversible markov chain that could be used with the Metropolis algorithm to produce the uniform distribution, as is done in randomSquareFreeStep, and the randomSquareFreeMonomialIdeal codes Example P = randomShelling(6,3,10) Q = randomShelling(6,3) Caveat No claim is made on the distribution of the random chain. SeeAlso randomAddition idealChainFromShelling idealFromShelling randomShellableIdeal randomSquareFreeStep randomSquareFreeMonomialIdeal /// ------------------------------------------------------------ -- DOCUMENTATION isShelling ------------------------------------------------------------ doc /// Key isShelling (isShelling,List) Headline determines whether a list represents a shelling of a simplicial complex. Usage b = isShelling(P) Inputs P:List A list of lists of integers. Each list of integers is a facet of the complex and the order is a possible shelling. Outputs b:Boolean true if and only if P is a shelling. Description Text An ordering $F_1,..F_d$ of the facets of a simplicial complex $P$ is shellable if $(F_1 \cup .. \cup F_{k-1}) \cap F_k$ is pure of dim$F_k -1$ for all $k = 2,..,d$. Determines if a list of faces is a shelling order of the simplicial complex. Example P = {{1, 2, 3}, {1, 2, 5}}; isShelling(P) Q = {{1,2,3},{3,4,5},{2,3,4}}; isShelling(Q) /// ------------------------------------------------------------ -- DOCUMENTATION randomAddition ------------------------------------------------------------ doc /// Key randomAddition (randomAddition,ZZ,ZZ,List) (randomAddition,Ring,ZZ,List) Headline Adds a random facet to a shellable complex Usage p=randomAddition(n,m,P) p=randomAddition(R,m,P) Inputs n:ZZ the number of vertices (if a ring is specified, {\tt n} is the number of variables. m:ZZ the dimension of the new facet P:List A list of lists of integers. Each list of integers is a facet of the complex and the order is a shelling. R:Ring A polynomial ring. Outputs p:List A list of lists of integers. Each list of integers is a facet of the complex and the order is a shelling. Description Text This function randomly chooses a facet of size {\tt m+1} and checks whether the facet can be shellably added to the shelling. If it can be shellably added to the shelling, it is added to the shelling and the new shelling is returned. Otherwise, the process repeats up to 20 times. Text This function can be used to randomly construct non-pure shellable complexes. A new {\tt m}-simplex can only be glued to previous simplices of dimension at least {\tt m}. If all previous simplices are smaller, then the addition will fail. Example P={{1,2,3}} P=randomAddition(6,2,P) P=randomAddition(6,1,P) Caveat If the input is not a shellable simplicial complex, the new complex will not be shellable. The function does not check whether the input is shellable. SeeAlso randomShelling idealChainFromShelling idealFromShelling /// ------------------------------------------------------------ -- DOCUMENTATION idealFromShelling ------------------------------------------------------------ doc /// Key idealFromShelling (idealFromShelling,List) (idealFromShelling,Ring,List) Headline Produces an ideal from a shelling Usage I = idealFromShelling(P) I = idealFromShelling(S,P) Inputs S:Ring (If omitted, it will use {\tt S=QQ[x_0..x_{n-1}]} where {\tt n} is the maximum integer in the lists of {\tt P}. P:List A list of lists of integers. Each list of integers is a facet of the complex and the order is a shelling. S:Ring (If omitted, it will use {\tt S=QQ[x_0..x_{n-1}]} where {\tt n} is the maximum integer in the lists of {\tt P}. Outputs I:Ideal generated by the monomials representing the minimal nonfaces of {\tt P} Description Text This gives the Stanley-Reisner ideal for the simplicial complex, that is the ideal generated by the monomials representing the minimal nonfaces of {\tt P}. Example S = QQ[x_0,x_1,x_2,x_3,x_4] P = {{1, 2, 4}, {0, 1, 4}, {0, 2, 4}, {0, 3, 4}}; idealFromShelling(S,P) SeeAlso idealChainFromShelling randomShellableIdeal /// ------------------------------------------------------------ -- DOCUMENTATION idealChainFromShelling ------------------------------------------------------------ doc /// Key idealChainFromShelling (idealChainFromShelling,List) (idealChainFromShelling,Ring,List) Headline Produces chains of ideals from a shelling. Usage L = idealChainFromShelling(P) L = idealChainFromShelling(R,P) Inputs R:Ring Polynomial ring P:List A (possibly impure) shelled simplicial complex, represented by a list of lists of integers. Each list of integers is a facet of the complex and the order is a shelling. If the ring R is specified, the output is a list of ideals in R; else it is a list of ideals in QQ[x_0..x_{n-1}], where n is the maximum number of elements in one of the lists of integers Outputs L:List a list of ideals Description Text Outputs the Stanley-Reisner ideal for each successive simplicial complex formed by truncating the shelling. Example P = {{1, 2, 4}, {0, 1, 4}, {0, 2, 4}, {0, 3, 4}}; idealChainFromShelling(P) SeeAlso idealFromShelling randomShellableIdealChain /// ------------------------------------------------------------ -- DOCUMENTATION randomShellableIdeal ------------------------------------------------------------ doc /// Key randomShellableIdeal (randomShellableIdeal,Ring,ZZ,ZZ) Headline Produces a ideal from a random shellable simplicial complex Usage I = randomShellableIdeal(R,m,k) Inputs R:Ring a polynomial ring m:ZZ dimension of facets in shellable complex k:ZZ the degree of the shellable complex Outputs I:MonomialIdeal the Stanley-Reisner ideal of a random shellable complex Description Text The Stanley-Reisner ideal of a shellable simplicial complex is always Cohen-Macaulay; the converse is not true, although, to paraphrase Arnol'd, square-free monomial ideals that have a serious reason to be Cohen-Macaulay generally do come from shellable complexes. The program makes a (Cohen-Macaulay) square-free monomial ideal from the Stanley-Reisner ideal of a random shellable simplicial complex. simplicial complex relies on the code for producing random shellable simplicial complexes; see randomShelling for a description. Example R = ZZ/101[x_0..x_4]; I = randomShellableIdeal(R,2,6) Caveat No claim is made on the distribution of the ideal. SeeAlso randomShelling idealFromShelling idealChainFromShelling randomShellableIdealChain /// ------------------------------------------------------------ -- DOCUMENTATION randomShellableIdealChain ------------------------------------------------------------ doc /// Key randomShellableIdealChain (randomShellableIdealChain,Ring,ZZ,ZZ) (randomShellableIdealChain,Ring,ZZ) Headline Produces a chain of ideals from a random shelling Usage L = randomShellableIdealChain(R,m,k) L = randomShellableIdealChain(R,m) Inputs R:Ring a polynomial ring m:ZZ dimension of the facets in the shellable complex k:ZZ the degree of the smallest ideal Outputs L:List list of Stanley-Riesner ideals of the simplicial complexes of the truncations of the shelling. Description Text Example R = ZZ/101[x_0..x_3]; L = randomShellableIdealChain(R,1) Caveat No claim is made on the distribution of the ideal. SeeAlso randomShelling idealFromShelling idealChainFromShelling randomShellableIdeal /// TEST/// setRandomSeed 0 S = ZZ/101[a,b,c,d,e] I = randomShellableIdeal(S,2,3) I == monomialIdeal (a, c*d*e) /// TEST/// assert(#randomShelling(5,2,6)==6) assert(#randomShelling(5,2)==binomial(5,3)) R=QQ[x1,x2,x3,x4,x5]; assert(#randomShelling(R,2,6)==6) /// TEST/// assert(isShelling({})) assert(isShelling({{1,2,3}})) assert(isShelling({{1,2,3},{2,3,4}})) assert(isShelling(randomShelling(5,3,5))) --non pure shellings assert(isShelling({{1,2,3},{2,4}})) assert(isShelling({{1},{2}})) assert(not isShelling({{1,3},{2,4}})) assert(isShelling({{1,2},{3}})) assert(not isShelling({{3},{1,2}})) /// TEST/// setRandomSeed(0); assert(#randomAddition(6,2,{{1,2,3}})==2) assert(#randomAddition(6,3,{{1,2,3,4}})==2) /// TEST/// needsPackage "SimplicialComplexes" needsPackage "SimplicialDecomposability" R=QQ[x1,x2,x3,x4,x5]; assert(isShellable simplicialComplex randomShelling(R,2,6)) /// beginDocumentation() doc /// Key randomMonomial (randomMonomial, ZZ, Ring) Headline Choose a random monomial of given degree in a given ring Usage m = randomMonomial(d,S) Inputs d: ZZ non-negative S: Ring polynomial ring Outputs m: RingElement monomial of S Description Text Chooses a random monomial. Example setRandomSeed(currentTime()) kk=ZZ/101 S=kk[a,b,c] randomMonomial(3,S) SeeAlso randomMonomialIdeal randomSquareFreeMonomialIdeal /// doc /// Key randomSquareFreeMonomialIdeal (randomSquareFreeMonomialIdeal, List, Ring) (randomSquareFreeMonomialIdeal, Sequence, Ring) Headline random square-free monomial ideal with given degree generators Usage I = randomSquareFreeMonomialIdeal(L,S) Inputs L:List or sequence of non-negative integers S:Ring Polynomial ring Outputs I:Ideal square-free monomial ideal with generators of specified degrees Description Text Choose a random square-free monomial ideal whose generators have the degrees specified by the list or sequence L. Example setRandomSeed(currentTime()) kk=ZZ/101 S=kk[a..e] L={3,5,7} randomSquareFreeMonomialIdeal(L, S) randomSquareFreeMonomialIdeal(5:2, S) Caveat The ideal is constructed degree by degree, starting from the lowest degree specified. If there are not enough monomials of the next specified degree that are not already in the ideal, the function prints a warning and returns an ideal containing all the generators of that degree. SeeAlso randomMonomial randomMonomialIdeal /// doc /// Key randomSquareFreeStep (randomSquareFreeStep, MonomialIdeal) (randomSquareFreeStep, Ideal) (randomSquareFreeStep, List) [randomSquareFreeStep,AlexanderProbability] Headline A step in a random walk with uniform distribution over all monomial ideals Usage M = randomSquareFreeStep(I) M = randomSquareFreeStep(I, AlexanderProbability => p) M = randomSquareFreeStep(L) M = randomSquareFreeStep(L, AlexanderProbability => p) Inputs I:Ideal square-free monomial Ideal or MonomialIdeal L:List {I,Igens,ISocgens} where I is a square-free MonomialIdeal, Igens is a List of its minimal generators, ISocgens is a List of the minimal generators of the socle mod I. Outputs M:List {J,Jgens,JSocgens} where J is a square-free MonomialIdeal, Jgens is a List of its minimal generators, JSocgens is a List of the minimal generators of the socle mod J. Description Text With probability p the routine takes the Alexander dual of I; the default value of p is .05, and it can be set with the option AlexanderProbility. Otherwise uses the Metropolis algorithm to produce a random walk on the space of square-free ideals. Note that there are a LOT of square-free ideals; these are the Dedekind numbers, and the sequence (with 1,2,3,4,5,6,7,8 variables) begins 3,6,20,168,7581, 7828354, 2414682040998, 56130437228687557907788. (see the Online Encyclopedia of Integer Sequences for more information). Given I in a polynomial ring S, we make a list ISocgens of the square-free minimal monomial generators of the socle of S/(squares+I) and a list of minimal generators Igens of I. A candidate "next" ideal J is formed as follows: We choose randomly from the union of these lists; if a socle element is chosen, it's added to I; if a minimal generator is chosen, it's replaced by the square-free part of the maximal ideal times it. the chance of making the given move is then 1/(#ISocgens+#Igens), and the chance of making the move back would be the similar quantity for J, so we make the move or not depending on whether random RR < (nJ+nSocJ)/(nI+nSocI) or not; here random RR is a random number in [0,1]. Example setRandomSeed(currentTime()) S=ZZ/2[vars(0..3)] J = monomialIdeal"ab,ad, bcd" randomSquareFreeStep J Text With 4 variables and 168 possible monomial ideals, a run of 5000 takes less than 6 seconds on a reasonably fast machine. With 10 variables a run of 1000 takes about 2 seconds. Example setRandomSeed(1) rsfs = randomSquareFreeStep J = monomialIdeal 0_S time T=tally for t from 1 to 5000 list first (J=rsfs(J,AlexanderProbability => .01)); #T T J /// doc /// Key AlexanderProbability Headline option to randomSquareFreeStep Usage M = randomSquareFreeStep(L, AlexanderProbability => p) Inputs p: RR real number between 0 and 1. Description Text Controls how often the Alexander dual is taken SeeAlso randomSquareFreeStep /// doc /// Key squareFree Headline ideal of all square-free monomials of given degree Usage I = squareFree(d,S) Inputs d:ZZ positive S:Ring Polynomial ring Outputs I:Ideal all square-free monomials of degree d Description Example kk=ZZ/101 S=kk[a..e] squareFree(3, S) SeeAlso randomSquareFreeMonomialIdeal /// doc /// Key (squareFree, ZZ, Ring) Headline ideal of all square-free monomials of given degree Usage I = squareFree(d,S) Inputs d:ZZ positive S:Ring Polynomial ring Outputs I:Ideal all square-free monomials of degree d Description Example kk=ZZ/101 S=kk[a..e] squareFree(3, S) SeeAlso randomSquareFreeMonomialIdeal /// doc /// Key regSeq (regSeq, List, Ring) (regSeq, Sequence, Ring) Headline regular sequence of powers of the variables, in given degrees Usage I = regSeq(L,S) Inputs L:List or sequence of positive integers S:Ring Polynomial ring Outputs I:Ideal generated by the given powers of the variables Description Example kk=ZZ/101 S=kk[a..e] regSeq((2,3,4),S) Caveat If the number of elements of L differs from the number of variables in the ring, the length of the regular sequence will be the minimum of the two. /// doc /// Key randomIdeal (randomIdeal, List, Matrix) (randomIdeal, Sequence, Matrix) Headline randomIdeal made from a given set of monomials Usage I = randomIdeal(L,m) Inputs L:List or sequence of positive integers m: Matrix 1xn matrix of homogeneous polynomials in a ring S Outputs I:Ideal generated by random linear combinations of degrees given by L of the given polynomials Description Text This function composes m with a random map from a free module with degrees specified by L to the source of m. Example kk=ZZ/101 S=kk[a..e] L={3,3,4,6} m = matrix{{a^3,b^4+c^4,d^5}} I=randomIdeal(L,m) SeeAlso randomMonomialIdeal randomSquareFreeMonomialIdeal randomMonomial randomBinomialIdeal randomPureBinomialIdeal randomElementsFromIdeal /// doc /// Key randomBinomialIdeal (randomBinomialIdeal, List, Ring) (randomBinomialIdeal, Sequence, Ring) Headline randomBinomialIdeal with binomials of given degrees Usage I = randomBinomialIdeal(L,S) Inputs L:List or sequence of positive integers S: Ring Polynomial ring Outputs I:Ideal generated by random binomials of the given degrees Description Example kk=ZZ/101 S=kk[a..e] L={3,3,4,6} I=randomBinomialIdeal(L,S) Caveat The binomials are generated one at a time, and there is no checking to see whether the ideal returned is minally generated by fewer elements, so the number of minimal generators may not be what you expect. SeeAlso randomIdeal randomMonomialIdeal randomSquareFreeMonomialIdeal randomMonomial randomPureBinomialIdeal randomElementsFromIdeal /// doc /// Key randomPureBinomialIdeal (randomPureBinomialIdeal, List, Ring) (randomPureBinomialIdeal, Sequence, Ring) Headline randomPureBinomialIdeal with binomials of given degrees Usage I = randomPureBinomialIdeal(L,S) Inputs L:List or sequence of positive integers S: Ring Polynomial ring Outputs I:Ideal generated by random pure binomials (that is, differences of monomials without coefficients) of the given degrees Description Text Example kk=ZZ/101 S=kk[a..e] L={3,3,4,6} I=randomPureBinomialIdeal(L,S) Caveat The binomials are generated one at a time, and there is no checking to see whether the ideal returned is minally generated by fewer elements, so the number of minimal generators may not be what you expect. SeeAlso randomIdeal randomMonomialIdeal randomSquareFreeMonomialIdeal randomMonomial randomBinomialIdeal randomElementsFromIdeal /// doc /// Key randomSparseIdeal (randomSparseIdeal, Matrix, ZZ, ZZ) Headline randomSparseIdeal made from a given set of monomials Usage I = randomSparseIdeal(B,s,n) Inputs B:Matrix 1xn matrix of monomials s: ZZ positive integer, the number of terms in the generators of I n: ZZ positive integer, the number of generators of I Outputs I:Ideal generated by n polynomials, each a random linear combination of s monomials Description Text Each generator of I is formed by randomly choosing s (the sparsity) entries of the matrix B and taking a random linear combinations with coefficients in the (ultimate) coefficient ring of S, the ring in which the monomials lie. Example kk=ZZ/101 S=kk[a..e] L={3,3,4,6} B = matrix{{a^3,b^4,d^5,a*b*c,e}} I=randomSparseIdeal(B,3,2) SeeAlso randomIdeal randomMonomialIdeal randomSquareFreeMonomialIdeal randomMonomial randomBinomialIdeal randomPureBinomialIdeal randomElementsFromIdeal /// doc /// Key randomElementsFromIdeal (randomElementsFromIdeal,List, Ideal) Headline Chooses random elements of given degrees in a given ideal. Usage I = randomElementsFromIdeal(L,I) Inputs L:List of integers I:Ideal that should be homogeneous Outputs I:Ideal generated by (at most) n homogeneous polynomials that are random linear combination of the generators of I, with degrees specified by the list L Description Example kk=ZZ/101 S=kk[a..c] L={3,3,4,6} I = ideal(a^3,b^3, c^3) J=randomElementsFromIdeal(L,I) SeeAlso "Finding Extreme Examples" randomIdeal randomMonomialIdeal randomSquareFreeMonomialIdeal randomMonomial randomBinomialIdeal randomPureBinomialIdeal /// doc /// Key randomMonomialIdeal (randomMonomialIdeal, List, Ring) (randomMonomialIdeal, Sequence, Ring) Headline random monomial ideal with given degree generators Usage I = randomMonomialIdeal(L,S) Inputs L:List or sequence of non-negative integers S:Ring Polynomial ring Outputs I:Ideal monomial ideal with generators of specified degrees Description Text Choose a random ideal whose generators have the degrees specified by the list or sequence L. Example kk=ZZ/101 S=kk[a..e] L={3,5,7} randomMonomialIdeal(L, S) randomMonomialIdeal(5:2, S) Caveat The ideal is constructed degree by degree, starting from the lowest degree specified. If there are not enough monomials of the next specified degree that are not already in the ideal, the function prints a warning and returns an ideal containing all the generators of that degree. SeeAlso randomMonomial randomSquareFreeMonomialIdeal /// doc /// Key "Finding Extreme Examples" Headline Ways to use random ideals to search for (counter)-examples Description Text A common use of Macaulay2 is to look for extreme or particularly interesting examples. Here are some examples of how this may be done. Supposing first that some space of examples is finite; for example, we might be interested in monomial ideals with a certain number of generators of a certain degree d. Suppose, to be concrete, that we want to compare the maximum degree of a first syzygy with the regularity of the ideal, and also with the maximum degree of the last syzygy. (To make the comparison interesting, it seems reasonable to subtract i from the maximum degree of an i-th syzygy.) Text We may have no idea where to look for extreme examples, and it seems that examples with small numbers of variables and generators may not show the range of phenomena that actually occur. In large degree there may be too many examples to search systematically; so instead we may choose many examples at random, and hope to see a pattern. Here is a simple example First we tally the projective dimensions of 500 random square-free monomial ideals (what's the average?), then looking how big the difference between the regularity of R/I and the "relation degree"-2 can be. It turns out this the differences are rather small, only 1 in a typical run of 5000. So one might look for ideals with a difference of 2, as in the following (in a real run, one would make the number of iterations much bigger; here we keep it small so that Macaulay2 doesn't take too long to build it's documentation files.) Example kk=ZZ/101 S=kk[vars(0..5)] L=for n from 1 to 100 list res randomSquareFreeMonomialIdeal(10:3,S); tally apply(L, F -> length F) tally apply(L, F -> regularity F - ((max flatten degrees F_2) - 2)) L=for n from 1 to 500 list res randomSquareFreeMonomialIdeal(10:3,S); scan(L, F -> if 1<(regularity F - (max flatten degrees F_2) + 2) then print F.dd_1) Text A typical problem might be to find how high the regularity of R/I can be when R has reasonably few variables, and the degrees of the generators of I are reasonably small; despite the wild examples of Mayr-Mayer, we don't know how to make examples with large regularity without letting the number of variables become large. The following program computes "rep" examples of random ideals with monomial and binomial generators, and prints any whose regularity exceeds the number "bound" looper = (rep,bound, L1, L2) -> (for i from 1 to rep do ( if i % 1000 == 0 then << "." << flush; J := randomMonomialIdeal(L1,S) + randomBinomialIdeal(L2,S); m := regularity coker gens J; if m >= bound then << "reg " << m << " " << toString J << endl;)) For example: kk=ZZ/2 S=kk[a,b,c,d] looper(30000,10,{4},{4,4}) -- finds examples with on monomial of degree 4 and 2 binomials of degree 4. The largest largest regularity it has found (and the largest I know for an ideal in 4 variables of degree 4) is 14. Here is an example it found: ideal(a*b^3,a^4+b^4,b*c^3+a*d^3) Similarly: looper(30000,10,{4,4},{4}) -- looks for examples with 2 monomials and 1 binomial of degree 4. Suggestively, the largest regularity it found was also 14: betti res ideal(c^4,b^4,a^3*c+b*d^3) -- reg 14 Text A more sophisticated and difficult situation arises when the space of examples is not necessarily finite (except over a finite field) but is a unirational variety (such as the space of ideals generated by (at most) a certain number of forms of certain given degrees, or the space of smooth curves of genus g for some g <= 14) one may be able to do a search for random examples, taking a rational parametrization of the space of examples and plugging in random inputs. If the "interesting" examples live in a subvariety whose codimension is small, then, working over a small field (say 2,3, or 5 elements) one might hope to see elements of the subvariety "not too rarely". This principle has been used to good effect for example by (Caviglia and Decker-Schreyer, ****--Schreyer). SeeAlso randomIdeal randomMonomialIdeal randomSquareFreeMonomialIdeal randomMonomial randomBinomialIdeal randomPureBinomialIdeal /// --Documentation doc /// Key randomEdgeIdeal (randomEdgeIdeal, ZZ, ZZ) Headline Creates an edge ideal from a random graph with n vertices and t edges. Usage (I,G) = randomEdgeIdeal(n,t) Inputs n:ZZ number of vertices t:ZZ number of edges Outputs I:Ideal a random edge ideal G:Graph the graph underlying I Description Text The edge ideal of a graph is the quadratic monomial ideal generated by x_v*x_w for all edges (v,w) in the graph. This method returns the edge ideal {\tt I} of a random graph {\tt G} which has n vertices and t edges. Example randomEdgeIdeal(7, 4) SeeAlso randomGraph edgeIdeal /// doc /// Key randomBinomialEdgeIdeal (randomBinomialEdgeIdeal, ZZ, ZZ) Headline Creates a binomial edge ideal from a random graph with n vertices and t edges. Usage (I,G) = randomBinomialEdgeIdeal(n,t) Inputs n:ZZ number of vertices t:ZZ number of edges Outputs I:Ideal a random binomial edge ideal G:Graph the graph underlying I Description Text The binomial edge ideal associated to a graph G is the quadratic binomial ideal generated by the set containing x_v*y_w-x_w-y_v for every edge (v,w) in G. This method returns the binomial edge ideal {\tt I} of a random graph {\tt G} which has n vertices and t edges. Example randomBinomialEdgeIdeal(7, 4) SeeAlso randomGraph binomialEdgeIdeal randomToricEdgeIdeal /// doc /// Key randomToricEdgeIdeal (randomToricEdgeIdeal, ZZ, ZZ) Headline Creates a toric edge ideal from a random graph with n vertices and t edges. Usage (I, G) = randomToricEdgeIdeal(n,t) Inputs n:ZZ number of vertices t:ZZ number of edges Outputs I:Ideal a random toric edge ideal G:Graph the graph underlying I Description Text The toric edge ideal of a graph G is the kernel of the map from the polynomial ring k[edges(G)] to the polynomial ring k[vertices G] taking an x_e to y_i*y_j, where e = (i,j). This method returns the toric edge ideal {\tt I} of a random graph {\tt G} which has n vertices and t edges. {\tt I} is the kernel of the homomorphism from QQ[x_1..x_n] to QQ/101[e_1..e_t] which sends each vertex in the graph {\tt G} to the product of its endpoints. Example randomToricEdgeIdeal(4,5) Text Note that his is different than the randomBinomialEdgeIdeal! Example randomBinomialEdgeIdeal(4,5) SeeAlso randomGraph randomBinomialEdgeIdeal /// TEST /// S=ZZ/101[a..e] setRandomSeed 123456 assert (randomMonomial(7,S)==a*b^3*c^3) setRandomSeed 123456 assert(randomMonomialIdeal({3,4,5}, S)==ideal(d*e^2,a*b*d^2,b*c^3*e)) setRandomSeed 123456 assert(randomSquareFreeMonomialIdeal({6,4,4},S)==ideal(a*b*c*e,a*c*d*e)) setRandomSeed 123456 assert(ideal(8*a^2+5*a*b+4*b^2+35*b*c+3*b*d+36*b*e,29*a^2+22*a*b+32*b^2-44*b*c-6*b*d+40*b*e) == randomIdeal({2,2},matrix{{a^2,b}})) setRandomSeed 123456 assert(ideal(-29*b^2+b*e,-4*a^2+b*c,45*a*d) == randomBinomialIdeal({2,2,2},S)) setRandomSeed 123456 assert(ideal(b*e-d*e,b^2-b*c,-a^2+a*e)== randomPureBinomialIdeal({2,2,2}, S)) setRandomSeed 123456 assert(randomSparseIdeal(matrix"a2,ab,b2", 2,2)==ideal(8*a*b+5*b^2,4*a^2+35*a*b)) assert(ideal(a*b,a*c,a*d,a*e,b*c,b*d,b*e,c*d,c*e,d*e)==squareFree(2,S)) assert( regSeq((1,2,3,4,5,6), S)==ideal(a,b^2,c^3,d^4,e^5)) setRandomSeed 123456 assert(degrees randomElementsFromIdeal({2,3,6},ideal"a2,ab,c5") == {{2}, {3}, {6}}) S=ZZ/2[a,b] setRandomSeed 1 --assert(prepare monomialIdeal(a^2, a*b)=={monomialIdeal (a^2 , a*b), {a^2 , a*b}, {0, 1}}) setRandomSeed 1 S=ZZ/2[vars(0..3)] J = ideal"ab,ad, bcd" assert( (randomSquareFreeStep J) === {monomialIdeal map((S)^1,(S)^{{-2},{-2}},{{a*b, a*d}}),{a*b,a*d},{b*c*d,a*c}} ); /// end-- restart loadPackage ("RandomIdeals", Reload =>true) load "RandomIdeals.m2" uninstallPackage "RandomIdeals" restart installPackage "RandomIdeals" check "RandomIdeals" viewHelp RandomIdeals
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