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MonomialOrbits.m2
newPackage( "MonomialOrbits", Version => "1.5", Date => "18 December 2020, last rev 1 June 2021", Authors => {{Name => "David Eisenbud", Email => "de@msri.org", HomePage => "http://www.msri.org/~de"}, {Name => "Mike Stillman", Email => "mike@math.cornell.edu", HomePage => "http://pi.math.cornell.edu/~mike"}}, Headline => "Orbit representatives of monomial ideals", Keywords => {"Combinatorial Commutative Algebra"}, PackageExports =>{"Truncations"}, -- for 'truncate' DebuggingMode => false ) export { "orbitRepresentatives", "hilbertRepresentatives", "normalForms", --options "MonomialType" } squareFree = method() squareFree(List, Ring) := Matrix => (d,R) -> ( if degreeLength R != #d then error("expected degrees of length "|degreeLength R); z := symbol z; R' := coefficientRing R[z_1..z_(numgens R), SkewCommutative => true, Degrees => degrees R]; phi := map(R,R',vars R); phi basis(d,R') ) squareFree(ZZ, Ring) := Matrix => (d,R) -> squareFree({d}, R) monomialsInDegree = method() monomialsInDegree(ZZ, Ring, String) := Matrix => (d, R, type) -> monomialsInDegree({d}, R, type) monomialsInDegree(List, Ring, String) := Matrix => (d, R, type) -> ( -- d: integer, or list (multidegree). -- R: polynomial ring -- type is either "All", "SquareFree" (anything else is an error) -- return: is a matrix of monomials of the given type and degree if #d != degreeLength R then error"expected valid (multi)degree"; if type === "SquareFree" then squareFree(d, R) else if type === "All" then basis(d, R) else error "expected MonomialType to be either \"All\" or \"SquareFree\"" ) hilbertRepresentatives = method(Options=>{MonomialType => "All"}) hilbertRepresentatives(Ring, VisibleList) := List => o -> (R, h) -> ( --orbit representatives of all monomial ideals I, if any, such that --hilbertFunction(i,R/I) = h_(i-1) for all i = 1,..,#h. G := permutations R; if h_0 > numgens R then error "not enough variables"; if min h < numgens R and o.MonomialType == "SquareFree" then return {}; result := if h_0 == numgens R then {monomialIdeal 0_R} else {monomialIdeal((gens R)_{0..numgens R - h_0 -1})}; rawMonsMat := matrix{{}}; mons := {}; for i from 2 to #h do ( rawMonsMat = monomialsInDegree(i, R, o.MonomialType); mons = flatten entries sort(rawMonsMat, DegreeOrder => Ascending, MonomialOrder => Descending); result = flatten for I in result list ( mons = flatten entries sort(compress(rawMonsMat % truncate(i, I)), DegreeOrder => Ascending, MonomialOrder => Descending); defect := hilbertFunction(i, R^1/I) - h_(i-1); if defect < 0 then continue; if h_(i-1) == 0 then ( if mons == {} then result1 := {I} else result1 = {monomialIdeal trim (I+ideal mons)} ) else ( result1 = {I}; scan(defect, j->( result1 = normalForms(sumMonomials(result1, mons), G); )) ); result1); ); result ) permutations Ring := R -> ( if not R.?cache then R.cache = new CacheTable; if not R.cache.?MonomialOrbits then R.cache.MonomialOrbits = new MutableHashTable; H := R.cache.MonomialOrbits; if not H#?"GroupElements" then H#"GroupElements" = for p in permutations numgens R list map(R, R, (vars R)_p); H#"GroupElements" ) sumMonomials = method() sumMonomials(List, List) := List => (L1, L2) -> ( --L1 list of monomial ideal --L2 list of monomials --return list of monomial ideals I' where --I' is an ideal I in L1 with a monomial from L2 adjoined --that is not in the ideal I -- --sorted. unique flatten for I in L1 list ( for m in L2 list ( if m % I != 0 then I+monomialIdeal m else continue ) ) ) sumMonomials(Ideal, List) := List => (I, L2) -> sumMonomials({I}, L2) normalForms = method() normalForms(List, List) := (Fs, G) -> ( <<"---"<< #Fs<<endl; -- Fs is a list of MonomialIdeals, G a list of ring maps -- returns a minimal subset F of Fs such that G F = Fs. if #Fs == 0 then return {}; S := ring Fs_0; G1 := select(G, s -> s vars S != vars S); -- remove the identity element if present. L := new MutableList from Fs; LH := hashTable for i from 0 to #Fs-1 list Fs#i => i; count := #L; if debugLevel > 0 then << "-- " << #L << " ideals" << endl; ans := for i from 0 to #L-1 list ( if L#i === null then continue; F := L#i; for f in G1 do ( H := monomialIdeal(f F); if LH#?H then ( j := LH#H; if j > i and L#j =!= null then ( L#j = null; count = count - 1; if count % 1000 == 0 and debugLevel > 0 then << "-- remaining count: " << count << endl; ); ); ); F ) ) --The Lis versions: Here a monomial is an exponent vector, which is a list of integers, and --a monomial ideal is a sorted list of exponent vectors. --Note that the zero monomial ideal is (), represented by {{}}, and this often has to be handled separately. --first methods for converting between monomial ideals and lists of lists toLis = method() toLis RingElement := List => m -> (exponents m)_0 toLis MonomialIdeal := List => I -> if I == 0 then {{}} else --reverse sort( I_*/(m-> toLis m)) sort( I_*/(m-> toLis m)) toMonLis = (S,e) -> product(#e, i-> S_i^(e_i)) fromLis = method() fromLis (Ring, List) := MonomialIdeal => (S,L) -> if L === {} then monomialIdeal 0_S else monomialIdeal apply(L,e-> toMonLis (S,e)) notIn = method() notIn(List, List) := Boolean => (m, L2) -> ( --returns true if m is not "divisible" by any element of L2. if L2 == {{}} then return true; diffs := apply(L2, n -> m-n); all(diffs, L -> min L < 0) ) monomialsInDegreeLis = method() monomialsInDegreeLis (VisibleList,Ring,String) := monomialsInDegreeLis(ZZ, Ring, String) := List => (d, R, type) -> ( -- d: integer, or list (multidegree). -- R: polynomial ring -- type is either "All", "SquareFree" (anything else is an error) -- return: is a matrix of monomials of the given type and degree flatten entries sort(monomialsInDegree(d,R,type), MonomialOrder => Descending)/toLis ) orbitRepresentatives = method(Options=>{MonomialType => "All"}) orbitRepresentatives(Ring, Ideal, VisibleList) := List => o -> (R, I, degs) -> ( if not isMonomialIdeal I then error"orbitRepresentatives:arg 1 is not a monomial ideal"; if #degs >1 then degs = sort toList(degs); -- more efficient to add the small degree gens first. n := numgens R; G := permutations n; result := {toLis monomialIdeal I}; --if I = 0, this gives {{}} ; has to be treated specially for d in degs do( mons := monomialsInDegreeLis(d, R, o.MonomialType); sumList := sumMonomialsLis(result, mons); result = normalFormsLis(sumList, G); ); result/(L -> fromLis(R,L)) ) orbitRepresentatives(Ring, VisibleList) := List => o -> (R, degs) -> ( ze := monomialIdeal 0_R; orbitRepresentatives(R, ze, degs, o) ) orbitRepresentatives(Ring, Ideal, Ideal, ZZ) := List => o -> (R, I, startmons, numelts) -> ( --take or subtract numelts elements from startmons mod I, plus I. if not isMonomialIdeal I then error"orbitRepresentatives:arg 1 is not a monomial ideal"; I = monomialIdeal I; if not isMonomialIdeal startmons then error"orbitRepresentatives:arg 2 is not a monomial ideal"; startmons = monomialIdeal startmons; n := numgens R; G := permutations n; num := abs(numelts); Ilis := if I == 0 then {} else toLis monomialIdeal I; startLis := toLis monomialIdeal startmons; start := if Ilis ==={} then startLis else for m in startLis list if notIn(m,Ilis) then m else continue; result := {Ilis}; --if I = 0, this gives {{}} ; has to be treated specially mons := start; apply(num, i-> ( sums := sumMonomialsLis(result, mons); result = normalFormsLis(sums, G) )); result = apply(result, L -> fromLis(R,L)); --case of subtraction: if numelts < 0 then( bigideal := fromLis(R, Ilis|start); result = for K in result list(I + (bigideal - K)) ); result) sumMonomialsLis = method() sumMonomialsLis(List, List) := List => (L1, L2) -> ( --L1: list of lists of lists, representing a list of monomial ideals, or a list representing a single --monomial ideal. --L2: list of lists, representing monomials --return list of lists L of lists; where --returns the list of monomial ideals I, each an ideal I' from L1 with a "monomial" from L2 adjoined --that is not divisible by any monomial in I', unique flatten for I in L1 list ( for m in L2 list if I == {{}} then {m} else if notIn(m, I) then sort (I | { m }) else continue )) normalFormsLis = method() normalFormsLis(List, List) := List => (Fs, G) -> ( -- Fs is a list of lists representing MonomialIdeals, G a list of permutations -- returns a minimal subset F of Fs such that G F = Fs. if #Fs == 0 then return {{}}; n := #(Fs_0_0); -- "number of variables" ident := apply(n, i-> i); G1 := select(G, g-> g != ident); -- remove the identity element if present. L := new MutableList from Fs; LH := hashTable for i from 0 to #Fs-1 list Fs#i => i; count := #L; if debugLevel > 0 then << "-- " << #L << " ideals" << endl; ans := for i from 0 to #L-1 list ( if L#i === null then continue; F := L#i; for f in G1 do ( H := sort apply(F, FF -> FF_f); if LH#?H then ( j := LH#H; if j > i and L#j =!= null then ( L#j = null; count = count - 1; if count % 1000 == 0 and debugLevel > 0 then << "-- remaining count: " << count << endl; ); ); ); F ); ans ) beginDocumentation() doc /// Key MonomialOrbits Headline find orbit representatives of monomial ideals, under permutations of the variables Description Text This package contains functions for the construction of representatives of the orbits of monomial ideals of a given type in a polynomial ring $S$ under the group of permutations of the variables of $S$. The type of the ideals may be defined either by the number of minimal generators of each degree, or by the set of monomials from which to choose or by the set of monomials from which to subtract in @TO orbitRepresentatives @ or by the Hilbert function, in @TO hilbertRepresentatives@. If the option {\tt MonomialType => "SquareFree"} is given, then only square-free monomial ideals are considered. Subnodes :Enumerating monomial ideals with given generator degrees or number of elements @TO orbitRepresentatives@ :Enumerating monomial ideals with given Hilbert function @TO hilbertRepresentatives@ :Options limiting the type of ideals generated @TO MonomialType@ /// doc /// Key orbitRepresentatives (orbitRepresentatives, Ring, VisibleList) (orbitRepresentatives, Ring, Ideal, VisibleList) (orbitRepresentatives, Ring, Ideal, Ideal, ZZ) [orbitRepresentatives, MonomialType] Headline find representatives of monomial ideals under permutations of variables Usage L = orbitRepresentatives(R, degs) L = orbitRepresentatives(R, I, degs) L = orbitRepresentatives(R, I, J, numelts) Inputs R:PolynomialRing degs:List or @ofClass Sequence@, of the degrees of the generators I:Ideal The starting ideal; all the ideals returned will contain this one. J:Ideal A monomial ideal containing monomials from which to add to I; when numelts < 0, then the ideals formed are I+J minus a certain number of monomials. numelts:ZZ If numelts >0 then each monomial ideal produced is I+ numelts elements of J; if numelts < 0 then each monomial ideal produced is I+J minus |numelts| elements of J. MonomialType => String (either {\tt "All"} or {\tt "SquareFree"}). For {\tt "All"}, all monomials are considered, and for {\tt "SquareFree"}, only square free monomials are considered Outputs L:List of monomial ideals Description Text This method generates a list of representatives of the orbits of monomial ideals with given minimal generator degrees under the group of permutations of the variables. If the option @TO MonomialType@ is set to "SquareFree", then only ideals of square-free monomials are considered. The program works by induction on the number of generators; given the list L of orbit representatives for the ideals minimally generated by the first k of the generators, the program adds all possible generators of the (k+1)-st degree to each of ideals in L in a certain order, and then removes those in the list that can be obtained by a permutation of variables from one that is earlier in the list. Because the generators are constrained to be minimal generators, it is advantageous to specify the low degrees of generators first. Note that {\tt degs} is specified as a VisibleList, which could be either a list or a sequence. Example S = ZZ/101[a..d]; L = orbitRepresentatives(S,(2,2,2)) #L tally apply(L, m->betti res m) L' = orbitRepresentatives(S,(2,2,2), MonomialType => "SquareFree") #L' tally apply(L', m->betti res m) I = monomialIdeal"a2,b2,c2,d2" L'' = orbitRepresentatives(S,I,{2,2,2}) tally apply(L'', m->betti res m) Text Multi-gradings are also allowed: Example S = ZZ/101[x_0..x_3, Degrees=>{{1,2},{2,1},{1,1},{1,0}}]; orbitRepresentatives(S,{{2,2},{2,1}}) Text Since the input data specifies degrees of minimal generators, the set of ideals may be empty: Example S = ZZ/101[a,b]; L = orbitRepresentatives(S,(2,2,2,2)) Text It is possible to give a starting monomial ideal, and add a given number of its generators. Example L = orbitRepresentatives(S,monomialIdeal a^3, (ideal(a,b))^3, 2) Text If the number given is negative, then all but that number of elements of the starting monomial ideal in arg 2 are taken. The starting monomial ideal is reduced mod the ideal in arg 1 before the process begins Example L = orbitRepresentatives(S,monomialIdeal a^3, (ideal(a,b))^3, -2) SeeAlso hilbertRepresentatives MonomialType /// doc /// Key hilbertRepresentatives (hilbertRepresentatives, Ring, VisibleList) [hilbertRepresentatives, MonomialType] Headline find representatives of monomial ideals under permutations of the variables Usage L = hilbertRepresentatives(R,s) Inputs R:PolynomialRing s:VisibleList of desired values of {\tt d->hilbertFunction(R/I,d)} for d in (1..length s) MonomialType => String (either {\tt "All"} or {\tt "SquareFree"}). For {\tt "All"}, all monomials are considered, and for {\tt "SquareFree"}, only square free monomials are considered Outputs L:List of monomial ideals Description Text This method generates a list of representatives of the orbits of monomial ideals with given Hilbert function, under the group of permutations of the variables. If the option @TO MonomialType@ is set to "SquareFree", then only ideals of square-free monomials are considered. Starting with orbit representatives of monomial ideals generated by all but s_0 linear forms, it successively adds to each monomial ideal already found as many forms of degree d in (2..1+length s) as necessary to achieve the desired Hilbert function, in all possible ways. After each addition it chooses representatives under the action of the group permuting the variables of the ring. Note that the (partial) Hilbert function is specified as a @TO VisibleList@, which could be either a list or a sequence. Example S = ZZ/101[a..d]; netList(L = hilbertRepresentatives(S,{4,7,10})) #L tally apply(L, m-> hilbertPolynomial(m,Projective => false)) tally apply(L, m->betti res m) tally apply(L, m->primaryDecomposition m) Text If the option @TO MonomialType@ is set to "SquareFree", then only ideals of square-free monomials are considered. Example netList hilbertRepresentatives(S,{4,7,10,13}, MonomialType => "SquareFree") Text It is possible to specify data which results in no ideals: Example S = ZZ/101[a,b]; hilbertRepresentatives(S,{1,4}) == {} SeeAlso orbitRepresentatives MonomialType /// doc /// Key normalForms (normalForms, List, List) Headline chooses orbit representatives from a list of monomial ideals, under a group of permutations Usage L' = normalForms(L,G) Inputs L:List list of monomial ideals in a ring R G:List list of permutations, written as automorphisms of R Outputs L':List list of representatives of the G-orbits in L Description Text To test a conjecture on monomial ideals of a certain type, one typically makes a computation on each one. If the computation is costly, and the result is invariant under a group G of permutations of the variables, it may be more efficient to choose orbit representatives first. Applying the ring automorphisms and then comparing the ideals can be slow. In the routine orbitRepresentatives, the monomial ideals are first turned into lists of exponent vector, and the normalForms operations are done on these using "normalFormsLis" instead of on the original ideals. The conversions to and from monomialIdeals and lists of lists are done with toLis and fromLis. Example R = ZZ/101[w,x,y,z] monlist = flatten entries basis(4,R) idlist = subsets(monlist, 3)/monomialIdeal; #oo Text There are 6545 ideals in 4 variables generated by 3 monomials of degree 4 Example G0 = permutations numgens R G = apply(G0, g -> map(R,R,(vars R)_g)) normalForms(idlist,G); --there are 244 #oo Text But only 333 orbits, a 19-fold reduction. SeeAlso orbitRepresentatives hilbertRepresentatives /// doc /// Key MonomialType Headline MonomialType => "SquareFree" or "All" Usage orbitRepresentatives(S,degs,MonomialType => "SquareFree") Description Text The default is "All". /// TEST/// R = ZZ/101[w,x,y,z] monlist = flatten entries basis(4,R) assert (#(idlist = subsets(monlist, 3)/monomialIdeal) == 6545) G0 = permutations numgens R G = apply(G0, g -> map(R,R,(vars R)_g)) assert(#normalForms(idlist,G) == 333) /// TEST/// S = ZZ/101[a..d]; assert(#orbitRepresentatives(S,(2,2,2)) == 11) assert(#orbitRepresentatives(S,{2,2,2}, MonomialType => "SquareFree") == 3) /// TEST/// debug MonomialOrbits #(G = permutations 4) #(G1 = drop(G,1)) Fs = {{{1, 0, 0, 0}, {0, 0, 0, 1}, {0, 0, 1, 0}}, {{1, 0, 0, 0}, {0, 0, 0, 1}, {0, 1, 0, 0}}, {{1, 0, 0, 0}, {0, 0, 1, 0}, {0, 1, 0, 0}}} Fs = Fs/sort assert(#normalFormsLis(Fs,G) == 1) /// TEST/// debug MonomialOrbits S = ZZ/101[x,y,z] L = monomialsInDegreeLis(4,S,"All") M = monomialsInDegree(4,S,"All") M' = sort(M, DegreeOrder => Ascending, MonomialOrder => Descending) assert(all(#L, i->toMonLis(S, L_i) === (flatten entries M')_i)) /// TEST/// restart loadPackage"MonomialOrbits" debug MonomialOrbits S = ZZ/101[x,y,z] L = monomialsInDegreeLis(4,S,"All") M = monomialsInDegree(4,S,"All") M' = sort(M, DegreeOrder => Ascending, MonomialOrder => Descending) assert(all(#L, i->toMonLis(S,L_i) === (flatten entries M')_i)) /// TEST/// S = ZZ/101[x_0..x_3, Degrees=>{{1,2},{2,1},{1,1},{1,0}}] result = orbitRepresentatives(S,{{2,2},{2,1}}) ans = {monomialIdeal(x_1, x_0*x_3), monomialIdeal(x_2*x_3, x_0*x_3), monomialIdeal(x_1, x_2^2), monomialIdeal(x_2*x_3, x_2^2)} assert(#result == 4) assert(set ans === set result) /// TEST/// S = ZZ/101[a,b,c] I = monomialIdeal"a3,b3,c3" assert(#orbitRepresentatives(S,{3,3,3}) == 25) assert(#orbitRepresentatives(S,I,{3}) == 2) assert(#orbitRepresentatives(S,monomialIdeal 0_S, (monomialIdeal vars S)^3, 3) == 25) assert(#orbitRepresentatives(S,I, (monomialIdeal vars S)^3, 1) == 2) R = ZZ/101[a..f] assert( orbitRepresentatives(R,{4,5}, MonomialType => "SquareFree") == {monomialIdeal (a*b*c*d, a*b*c*e*f)}) /// TEST/// R = ZZ/101[a,b] assert(hilbertRepresentatives(R,{2,2}) == {monomialIdeal a^2 , monomialIdeal(a*b)}) assert(toString\hilbertRepresentatives(R,{2,2,1,0}) =={"monomialIdeal(a^2,a*b^2,b^4)", "monomialIdeal(a^2,b^3)", "monomialIdeal(a^3,a*b,b^4)"}) assert(hilbertRepresentatives(R,{2,3,0}) =={monomialIdeal(a^3,a^2*b,a*b^2,b^3)}) R = ZZ/101[a,b,c] assert(#hilbertRepresentatives(R,{2}) == 1) assert(#hilbertRepresentatives(R,{2,0}) == 1) assert(#hilbertRepresentatives(R,{2,2,1}) == 3) assert(#hilbertRepresentatives(R,{2,2,1,0}) == #hilbertRepresentatives(R,{2,2,1})) assert(#hilbertRepresentatives(R,{3,4,5}) == 2) assert(#hilbertRepresentatives(R,{3,4,0}) == 4) /// TEST/// debug needsPackage "MonomialOrbits" S = ZZ/101[a,b,c,d] assert(# permutations S == 24) /// /// restart debug loadPackage("MonomialOrbits", Reload=>true) /// TEST/// S = ZZ/101[a..d] mm = monomialIdeal gens S assert ({monomialIdeal (a, b, c)} == orbitRepresentatives(S, monomialIdeal S_0, mm, -1) ) assert ( #orbitRepresentatives(S, monomialIdeal S_0, mm, -1) == 1 ) assert( {monomialIdeal(a, b^2,b*c,c^2,b*d,c*d), monomialIdeal(a,b^2,b*c,c^2,b*d,d^2)} == orbitRepresentatives(S, monomialIdeal S_0, mm^2, -1) ) assert({monomialIdeal (a, d)} == orbitRepresentatives(S, monomialIdeal S_0, mm, 1) ) assert( {monomialIdeal(a,c*d,d^2), monomialIdeal(a,c^2,d^2), monomialIdeal(a,b*c,d^2), monomialIdeal(a,b*d,c*d)} == orbitRepresentatives(S, monomialIdeal S_0, mm^2, 2) ) /// ///--new TEST restart loadPackage "MonomialOrbits" debugLevel = 1 /// TEST/// debug MonomialOrbits; S = ZZ/101[x,y,z] mm = ideal vars S I = monomialIdeal monomialsInDegree(3,S,"All") L = toLis I assert(I_* == (fromLis(S, toLis I))_*) ze = monomialIdeal 0_S ans1 = orbitRepresentatives(S,ze, {2,2}) -- both of these pairs should be singletons: ans2 = orbitRepresentatives(S,ze, {2,2}) -- both of these pairs should be singletons: assert(ans1==ans2) ans1 = orbitRepresentatives(S,ze, {3}) ans2 = orbitRepresentatives(S,ze, {3}) assert(ans1==ans2) ans1 = orbitRepresentatives(S,monomialIdeal(x^3), {3}) ans2 = orbitRepresentatives(S,monomialIdeal(x^3), {3}) assert(ans1==ans2) ans1 = orbitRepresentatives(S,monomialIdeal(z^3), {3}) ans2 = orbitRepresentatives(S,monomialIdeal(z^3), {3}) assert(ans1 == ans2) ans1 = orbitRepresentatives(S,monomialIdeal(0_S), {3,3}) ans2 = orbitRepresentatives(S,monomialIdeal(0_S), {3,3}) assert(ans1 == ans2) assert(#orbitRepresentatives (S, ze, 3:5) == 238) ans1 = orbitRepresentatives (S, ze, {2,3,4}) ans2 = orbitRepresentatives (S, ze, (2,3,4)) assert(ans1 == ans2) ans3 = orbitRepresentatives (S, {2,3,4}) assert(ans1 == ans3) assert(#orbitRepresentatives (S, monomialIdeal x, mm, -1) == 1) assert(#orbitRepresentatives (S, ze, mm, -1) == 1) /// end----------------------------------- /// restart loadPackage("MonomialOrbits", Reload => true) uninstallPackage "MonomialOrbits" restart installPackage "MonomialOrbits" check "MonomialOrbits" viewHelp MonomialOrbits /// n = 4 x = symbol x S = ZZ/101[x_1..x_n] ze = monomialIdeal 0_S mm = monomialIdeal gens S --timing for version of June 1, 2021 on DE's IMac Pro: (d,s) = (4,4) #elapsedTime orbitRepresentatives (S, ze, mm^d, s) --.958 sec #elapsedTime orbitRepresentatives (S, ze, mm^d, -s) --1.021 sec #elapsedTime orbitRepresentatives (S, ze, s:d) --.980 sec --for an earlier version, the timing was 41.5 sec.
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